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    SMARCAD1 SNF2 related chromatin remodeling ATPase with DExD box 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100354709, updated on 20-Sep-2024

    Summary

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    Gene symbol
    SMARCAD1
    Gene description
    SNF2 related chromatin remodeling ATPase with DExD box 1
    See related
    Ensembl:ENSOCUG00000017283
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCAD1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 15 NC_067388.1 (52580861..52661015, complement)

    Chromosome 15 - NC_067388.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-beta-like Neighboring gene hematopoietic prostaglandin D synthase Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC127483162

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067388.1 Chromosome 15 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
    Names
    SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067388.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      52580861..52661015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008267592.3 → XP_008265814.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_008265814.1

      UniProtKB/TrEMBL
      G1TDE1
      Related
      ENSOCUP00000039520.1
      Conserved Domains (3) summary
      cd00046
      Location:516 → 658
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:499 → 786
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:852 → 966
      Helicase_C; Helicase conserved C-terminal domain

    2. XM_008267591.3 → XP_008265813.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_008265813.1

      UniProtKB/TrEMBL
      G1TDE1
      Related
      ENSOCUP00000014856.4
      Conserved Domains (3) summary
      cd00046
      Location:516 → 658
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:499 → 786
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:852 → 966
      Helicase_C; Helicase conserved C-terminal domain

    3. XM_008267593.3 → XP_008265815.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      Conserved Domains (3) summary
      cd00046
      Location:87 → 229
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:70 → 357
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:423 → 537
      Helicase_C; Helicase conserved C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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