U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SEMA6D semaphorin 6D [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100353114, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SEMA6D
    Gene description
    semaphorin 6D
    See related
    Ensembl:ENSOCUG00000007901
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SEMA6D in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 17 NC_067390.1 (25750016..26412767, complement)

    Chromosome 17 - NC_067390.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103351112 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC127483782 Neighboring gene 60S ribosomal protein L10-like Neighboring gene eukaryotic translation initiation factor 1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_067390.1 Chromosome 17 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    semaphorin-6D
    Names
    sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067390.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      25750016..26412767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051822409.1 → XP_051678369.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      G1SU23

    2. XM_051822408.1 → XP_051678368.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      G1SU23

    3. XM_051822410.1 → XP_051678370.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      G1SU23

    4. XM_017348065.2 → XP_017203554.1  semaphorin-6D isoform X11

    5. XM_051822412.1 → XP_051678372.1  semaphorin-6D isoform X7

    6. XM_017348061.2 → XP_017203550.1  semaphorin-6D isoform X6

    7. XM_017348063.2 → XP_017203552.1  semaphorin-6D isoform X9

    8. XM_017348059.2 → XP_017203548.1  semaphorin-6D isoform X4

      UniProtKB/TrEMBL
      G1SU23

    9. XM_002717873.4 → XP_002717919.1  semaphorin-6D isoform X3

      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 569
      PSI; Plexin repeat

    10. XM_017348064.2 → XP_017203553.1  semaphorin-6D isoform X10

      UniProtKB/TrEMBL
      A0A5F9DTC2
      Related
      ENSOCUP00000048773.1

    11. XM_017348060.2 → XP_017203549.1  semaphorin-6D isoform X5

      UniProtKB/TrEMBL
      A0A5F9CLQ1
      Related
      ENSOCUP00000034579.1

    12. XM_017348062.2 → XP_017203551.1  semaphorin-6D isoform X8

      UniProtKB/TrEMBL
      A0A5F9CW96
      Related
      ENSOCUP00000037557.1

    13. XM_017348058.2 → XP_017203547.1  semaphorin-6D isoform X2

    14. XM_017348055.2 → XP_017203544.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      G1SU23
      Related
      ENSOCUP00000006832.4

    15. XM_051822411.1 → XP_051678371.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      G1SU23
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials