U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CRTAC1 cartilage acidic protein 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100352703, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    CRTAC1
    Gene description
    cartilage acidic protein 1
    See related
    Ensembl:ENSOCUG00000004978
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CRTAC1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 18 NC_067391.1 (42919037..43069143, complement)

    Chromosome 18 - NC_067391.1Genomic Context describing neighboring genes Neighboring gene secreted frizzled related protein 5 Neighboring gene 60S ribosomal protein L27-like Neighboring gene golgin A7 family member B Neighboring gene microRNA mir-3085 Neighboring gene R3H domain and coiled-coil containing 1 like Neighboring gene vacuole membrane protein 1-like Neighboring gene lysyl oxidase like 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_067391.1 Chromosome 18 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonal fasciculation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cartilage acidic protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067391.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      42919037..43069143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008270310.3 → XP_008268532.1  cartilage acidic protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F9DCK3, G1SMX6
      Related
      ENSOCUP00000004306.3
      Conserved Domains (3) summary
      pfam07593
      Location:460 → 512
      UnbV_ASPIC; ASPIC and UnbV
      pfam07645
      Location:559 → 605
      EGF_CA; Calcium-binding EGF domain
      pfam13517
      Location:299 → 363
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    2. XM_051824045.1 → XP_051680005.1  cartilage acidic protein 1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.