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    LOC100350178 heterochromatin protein 1-binding protein 3 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100350178, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC100350178
    Gene description
    heterochromatin protein 1-binding protein 3
    See related
    Ensembl:ENSOCUG00000002445
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
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    Genomic context

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    See LOC100350178 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259418.1 (37050..82598, complement)

    NW_026259418.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF17 Neighboring gene SH2 domain-containing protein 5 Neighboring gene U1 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 4 gamma 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026259418 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heterochromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterochromatin protein 1-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NW_026259418.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      37050..82598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051840036.1 → XP_051695996.1  heterochromatin protein 1-binding protein 3 isoform X2

    2. XM_051840032.1 → XP_051695992.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      G1SHK6

    3. XM_051840033.1 → XP_051695993.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      G1SHK6

    4. XM_051840038.1 → XP_051695998.1  heterochromatin protein 1-binding protein 3 isoform X2

    5. XM_051840035.1 → XP_051695995.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      G1SHK6

    6. XM_051840034.1 → XP_051695994.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      G1SHK6

    7. XM_051840037.1 → XP_051695997.1  heterochromatin protein 1-binding protein 3 isoform X2

    8. XM_051840039.1 → XP_051695999.1  heterochromatin protein 1-binding protein 3 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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