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    ATP6V0D1 ATPase H+ transporting V0 subunit d1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100350157, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ATP6V0D1
    Gene description
    ATPase H+ transporting V0 subunit d1
    See related
    Ensembl:ENSOCUG00000011850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V0D1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 5 NC_067378.1 (23028252..23074450, complement)

    Chromosome 5 - NC_067378.1Genomic Context describing neighboring genes Neighboring gene tubulin polymerization-promoting protein family member 3 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene uncharacterized LOC127491331 Neighboring gene agouti related neuropeptide Neighboring gene collagen alpha-1(I) chain Neighboring gene RHO family interacting cell polarization regulator 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067378.1 Chromosome 5 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit d 1
    Names
    ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
    ATPase, H+ transporting, lysosomal, V0 subunit d1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067378.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      23028252..23074450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002711614.4 → XP_002711660.3  V-type proton ATPase subunit d 1

      UniProtKB/TrEMBL
      A0A5F9DQQ8
      Related
      ENSOCUP00000048360.1
      Conserved Domains (1) summary
      pfam01992
      Location:16 → 344
      vATP-synt_AC39; ATP synthase (C/AC39) subunit
    Nucleotide Protein
    Heading Accession and Version

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