U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SOX5 SRY-box transcription factor 5 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100348988, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SOX5
    Gene description
    SRY-box transcription factor 5
    See related
    Ensembl:ENSOCUG00000011479
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SOX5 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 8 NC_067381.1 (94988163..96077580, complement)

    Chromosome 8 - NC_067381.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L6-like Neighboring gene tubulin alpha-4 chain-like Neighboring gene uncharacterized LOC127492146 Neighboring gene uncharacterized LOC108176988 Neighboring gene U2 spliceosomal RNA Neighboring gene transcription initiation factor IIA subunit 2-like Neighboring gene branched chain amino acid transaminase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_067381.1 Chromosome 8 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of chondrocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor SOX-5
    Names
    SRY (sex determining region Y)-box 5
    SRY-box 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067381.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      94988163..96077580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051850862.1 → XP_051706822.1  transcription factor SOX-5 isoform X8

    2. XM_051850860.1 → XP_051706820.1  transcription factor SOX-5 isoform X6

    3. XM_051850859.1 → XP_051706819.1  transcription factor SOX-5 isoform X5

    4. XM_051850871.1 → XP_051706831.1  transcription factor SOX-5 isoform X12

      UniProtKB/TrEMBL
      A0A5F9C5Z6

    5. XM_051850857.1 → XP_051706817.1  transcription factor SOX-5 isoform X1

    6. XM_051850870.1 → XP_051706830.1  transcription factor SOX-5 isoform X11

    7. XM_051850858.1 → XP_051706818.1  transcription factor SOX-5 isoform X3

    8. XM_051850864.1 → XP_051706824.1  transcription factor SOX-5 isoform X8

    9. XM_008259535.3 → XP_008257757.1  transcription factor SOX-5 isoform X8

      See identical proteins and their annotated locations for XP_008257757.1

      UniProtKB/TrEMBL
      A0A5F9C6W3
      Conserved Domains (1) summary
      cd01388
      Location:544 → 615
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    10. XM_051850867.1 → XP_051706827.1  transcription factor SOX-5 isoform X9

    11. XM_008259527.3 → XP_008257749.1  transcription factor SOX-5 isoform X4

      UniProtKB/TrEMBL
      A0A5F9C6W3
      Related
      ENSOCUP00000009872.2
      Conserved Domains (1) summary
      cd01388
      Location:557 → 628
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    12. XM_051850866.1 → XP_051706826.1  transcription factor SOX-5 isoform X8

    13. XM_051850861.1 → XP_051706821.1  transcription factor SOX-5 isoform X7

    14. XM_051850869.1 → XP_051706829.1  transcription factor SOX-5 isoform X5

    15. XM_008259534.3 → XP_008257756.1  transcription factor SOX-5 isoform X8

      See identical proteins and their annotated locations for XP_008257756.1

      UniProtKB/TrEMBL
      A0A5F9C6W3
      Conserved Domains (1) summary
      cd01388
      Location:544 → 615
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    16. XM_051850868.1 → XP_051706828.1  transcription factor SOX-5 isoform X10

    17. XM_017343332.2 → XP_017198821.1  transcription factor SOX-5 isoform X2

      UniProtKB/TrEMBL
      A0A5F9C6W3

    18. XM_051850865.1 → XP_051706825.1  transcription factor SOX-5 isoform X8

    19. XM_008259536.3 → XP_008257758.1  transcription factor SOX-5 isoform X13

      Conserved Domains (1) summary
      cd01388
      Location:325 → 396
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    20. XM_008259537.3 → XP_008257759.1  transcription factor SOX-5 isoform X14

      Conserved Domains (1) summary
      cd01388
      Location:324 → 395
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    21. XM_008259538.3 → XP_008257760.1  transcription factor SOX-5 isoform X15

      Conserved Domains (1) summary
      cd01388
      Location:317 → 388
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    22. XM_008259539.3 → XP_008257761.1  transcription factor SOX-5 isoform X16

      Conserved Domains (1) summary
      cd01388
      Location:316 → 387
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    23. XM_017343337.2 → XP_017198826.1  transcription factor SOX-5 isoform X17

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials