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    SLC13A5 solute carrier family 13 member 5 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100348089, updated on 10-Oct-2024

    Summary

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    Gene symbol
    SLC13A5
    Gene description
    solute carrier family 13 member 5
    See related
    Ensembl:ENSOCUG00000009885
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC13A5 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 19 NC_067392.1 (11467150..11497534, complement)

    Chromosome 19 - NC_067392.1Genomic Context describing neighboring genes Neighboring gene KIAA0753 ortholog Neighboring gene thioredoxin domain containing 17 Neighboring gene mediator complex subunit 31 Neighboring gene uncharacterized LOC103351485 Neighboring gene XIAP associated factor 1 Neighboring gene F-box protein 39

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067392.1 Chromosome 19 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables citrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium:dicarboxylate symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables succinate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in citrate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic anion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Na(+)/citrate cotransporter
    Names
    solute carrier family 13 (sodium-dependent citrate transporter), member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067392.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      11467150..11497534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051825339.1 → XP_051681299.1  Na(+)/citrate cotransporter isoform X2

    2. XM_002718849.4 → XP_002718895.1  Na(+)/citrate cotransporter isoform X1

      UniProtKB/TrEMBL
      A0A5F9CEM0
      Related
      ENSOCUP00000032062.1
      Conserved Domains (2) summary
      COG0471
      Location:31 → 550
      CitT; Di- and tricarboxylate transporter [Carbohydrate transport and metabolism]
      cl21473
      Location:31 → 555
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...
    Nucleotide Protein
    Heading Accession and Version

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