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    RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100346526, updated on 25-Apr-2024

    Summary

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    Gene symbol
    RTCB
    Gene description
    RNA 2',3'-cyclic phosphate and 5'-OH ligase
    See related
    Ensembl:ENSOCUG00000008280
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See RTCB in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 4 NC_067377.1 (96212593..96240064)

    Chromosome 4 - NC_067377.1Genomic Context describing neighboring genes Neighboring gene F-box protein 7 Neighboring gene BPI fold containing family C Neighboring gene achaete-scute family bHLH transcription factor 4 Neighboring gene PR/SET domain 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067377.1 Chromosome 4 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of tRNA-splicing ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-splicing ligase RtcB homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067377.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      96212593..96240064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002711419.4 → XP_002711465.1  RNA-splicing ligase RtcB homolog

      UniProtKB/TrEMBL
      G1SUU7
      Related
      ENSOCUP00000007152.4
      Conserved Domains (2) summary
      COG1690
      Location:28 → 505
      RtcB; RNA-splicing ligase RtcB, repairs tRNA damage [Translation, ribosomal structure and biogenesis]
      pfam01139
      Location:65 → 505
      RtcB; tRNA-splicing ligase RtcB
    Nucleotide Protein
    Heading Accession and Version

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