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    SCCPDH saccharopine dehydrogenase (putative) [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100346223, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SCCPDH
    Gene description
    saccharopine dehydrogenase (putative)
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SCCPDH in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 16 NC_067389.1 (64511323..64546685)

    Chromosome 16 - NC_067389.1Genomic Context describing neighboring genes Neighboring gene transcription factor B2, mitochondrial Neighboring gene consortin, connexin sorting protein Neighboring gene small nucleolar RNA SNORA40 Neighboring gene kinesin-like protein KIF28 Neighboring gene AT-hook containing transcription factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067389.1 Chromosome 16 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in glycolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    saccharopine dehydrogenase-like oxidoreductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067389.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      64511323..64546685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017347699.2 → XP_017203188.1  saccharopine dehydrogenase-like oxidoreductase isoform X2

    2. XM_002717629.4 → XP_002717675.1  saccharopine dehydrogenase-like oxidoreductase isoform X1

      UniProtKB/TrEMBL
      G1SEN8
      Conserved Domains (2) summary
      COG3268
      Location:1 → 421
      COG3268; Uncharacterized conserved protein, related to short-chain dehydrogenases [Function unknown]
      pfam03435
      Location:10 → 149
      Sacchrp_dh_NADP; Saccharopine dehydrogenase NADP binding domain
    Nucleotide Protein
    Heading Accession and Version

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