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    SNF8 SNF8 subunit of ESCRT-II [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100345109, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SNF8
    Gene description
    SNF8 subunit of ESCRT-II
    See related
    Ensembl:ENSOCUG00000009156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SNF8 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 19 NC_067392.1 (36027192..36037255)

    Chromosome 19 - NC_067392.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 2 mRNA binding protein 1 Neighboring gene gastric inhibitory polypeptide Neighboring gene ubiquitin conjugating enzyme E2 Z Neighboring gene ATP synthase membrane subunit c locus 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067392.1 Chromosome 19 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT II complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar-sorting protein SNF8
    Names
    EAP30 subunit of ELL complex
    SNF8, ESCRT-II complex subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067392.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      36027192..36037255
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002719308.4 → XP_002719354.1  vacuolar-sorting protein SNF8 isoform X1

      UniProtKB/TrEMBL
      A0A5F9CJH6, G1SWN1
      Related
      ENSOCUP00000033851.1
      Conserved Domains (1) summary
      pfam04157
      Location:7 → 225
      EAP30; EAP30/Vps36 family

    2. XM_017349163.2 → XP_017204652.1  vacuolar-sorting protein SNF8 isoform X2

      Conserved Domains (1) summary
      pfam04157
      Location:6 → 190
      EAP30; EAP30/Vps36 family
    Nucleotide Protein
    Heading Accession and Version

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