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    TUB TUB bipartite transcription factor [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100342264, updated on 10-Oct-2024

    Summary

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    Gene symbol
    TUB
    Gene description
    TUB bipartite transcription factor
    See related
    Ensembl:ENSOCUG00000017198
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See TUB in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 1 NC_067374.1 (163628025..163723765)

    Chromosome 1 - NC_067374.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10A3 Neighboring gene NLR family pyrin domain containing 10 Neighboring gene uncharacterized LOC103350292 Neighboring gene eukaryotic translation initiation factor 3 subunit F Neighboring gene RIC3 acetylcholine receptor chaperone Neighboring gene small nucleolar RNA SNORA76 Neighboring gene uncharacterized LOC127484357 Neighboring gene LIM domain only 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067374.1 Chromosome 1 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization to cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubby protein homolog
    Names
    tubby bipartite transcription factor
    tubby homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067374.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      163628025..163723765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008265667.3 → XP_008263889.2  tubby protein homolog isoform X4

    2. XM_008265655.3 → XP_008263877.2  tubby protein homolog isoform X2

    3. XM_008265651.3 → XP_008263873.1  tubby protein homolog isoform X1

      UniProtKB/TrEMBL
      G1TD76
      Conserved Domains (2) summary
      pfam01167
      Location:268 → 509
      Tub; Tub family
      pfam16322
      Location:29 → 247
      Tub_N; Tubby N-terminal

    4. XM_002708791.4 → XP_002708837.1  tubby protein homolog isoform X3

      UniProtKB/TrEMBL
      G1TD76, G1TG32
      Related
      ENSOCUP00000015880.1
      Conserved Domains (2) summary
      pfam01167
      Location:258 → 499
      Tub; Tub family
      pfam16322
      Location:29 → 237
      Tub_N; Tubby N-terminal
    Nucleotide Protein
    Heading Accession and Version

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