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    CPNE6 copine 6 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100342224, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CPNE6
    Gene description
    copine 6
    See related
    Ensembl:ENSOCUG00000007153
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See CPNE6 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 17 NC_067390.1 (45023648..45030259)

    Chromosome 17 - NC_067390.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108178296 Neighboring gene dehydrogenase/reductase (SDR family) member 4 Neighboring gene capping protein regulator and myosin 1 linker 3 Neighboring gene neural retina leucine zipper Neighboring gene phosphoenolpyruvate carboxykinase 2, mitochondrial Neighboring gene DDB1 and CUL4 associated factor 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067390.1 Chromosome 17 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copine-6
    Names
    copine VI (neuronal)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067390.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      45023648..45030259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051822702.1 → XP_051678662.1  copine-6

      UniProtKB/TrEMBL
      G1SSG3

    2. XM_008269393.3 → XP_008267615.1  copine-6

      See identical proteins and their annotated locations for XP_008267615.1

      UniProtKB/TrEMBL
      G1SSG3
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine

    3. XM_008269394.3 → XP_008267616.1  copine-6

      See identical proteins and their annotated locations for XP_008267616.1

      UniProtKB/TrEMBL
      G1SSG3
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine
    Nucleotide Protein
    Heading Accession and Version

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