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    EMG1 EMG1 N1-specific pseudouridine methyltransferase [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100342038, updated on 8-Mar-2024

    Summary

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    Gene symbol
    EMG1
    Gene description
    EMG1 N1-specific pseudouridine methyltransferase
    See related
    Ensembl:ENSOCUG00000003603
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See EMG1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 8 NC_067381.1 (78665004..78671863, complement)

    Chromosome 8 - NC_067381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127492050 Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene small nucleolar RNA U89 Neighboring gene prohibitin 2 Neighboring gene microRNA mir-141

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067381.1 Chromosome 8 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (pseudouridine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA small subunit methyltransferase NEP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067381.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      78665004..78671863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002712746.4 → XP_002712792.1  ribosomal RNA small subunit methyltransferase NEP1

      UniProtKB/TrEMBL
      G1SK16
      Related
      ENSOCUP00000003124.2
      Conserved Domains (1) summary
      pfam03587
      Location:45 → 237
      EMG1; EMG1/NEP1 methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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