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    TGFB1I1 transforming growth factor beta 1 induced transcript 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100340706, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TGFB1I1
    Gene description
    transforming growth factor beta 1 induced transcript 1
    See related
    Ensembl:ENSOCUG00000010896
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See TGFB1I1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259197.1 (1227195..1232465, complement)

    NW_026259197.1Genomic Context describing neighboring genes Neighboring gene alpha hemoglobin stabilizing protein Neighboring gene RUS family member 1 Neighboring gene solute carrier family 5 member 2 Neighboring gene armadillo repeat containing 5 Neighboring gene MAP/microtubule affinity-regulating kinase 3 Neighboring gene PHD finger protein 6-like Neighboring gene vomeronasal 1 receptor oryCunV1R1645

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026259197 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transforming growth factor beta-1-induced transcript 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NW_026259197.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      1227195..1232465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002721726.4 → XP_002721772.1  transforming growth factor beta-1-induced transcript 1 protein

      UniProtKB/TrEMBL
      G1T078
      Related
      ENSOCUP00000009378.2
      Conserved Domains (5) summary
      cd09337
      Location:288 → 339
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cd09409
      Location:347 → 399
      LIM3_Paxillin; The third LIM domain of paxillin
      cd09412
      Location:406 → 457
      LIM4_Leupaxin; The fourth LIM domain of Leupaxin
      cd09336
      Location:229 → 281
      LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
      pfam03535
      Location:86 → 144
      Paxillin; Paxillin family
    Nucleotide Protein
    Heading Accession and Version

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