U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ATAD2B ATPase family AAA domain containing 2B [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100340219, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ATAD2B
    Gene description
    ATPase family AAA domain containing 2B
    See related
    Ensembl:ENSOCUG00000005723
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATAD2B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 2 NC_067375.1 (173107072..173348597, complement)

    Chromosome 2 - NC_067375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103347828 Neighboring gene kelch like family member 29 Neighboring gene uncharacterized LOC127490353 Neighboring gene uncharacterized LOC127490354 Neighboring gene UBX domain protein 2A Neighboring gene MFSD2 lysolipid transporter B, sphingolipid

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_067375.1 Chromosome 2 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATPase family AAA domain-containing protein 2B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067375.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      173107072..173348597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051843170.1 → XP_051699130.1  ATPase family AAA domain-containing protein 2B isoform X2

    2. XM_051843171.1 → XP_051699131.1  ATPase family AAA domain-containing protein 2B isoform X3

    3. XM_051843169.1 → XP_051699129.1  ATPase family AAA domain-containing protein 2B isoform X1

    4. XM_002710061.4 → XP_002710107.1  ATPase family AAA domain-containing protein 2B isoform X4

      UniProtKB/TrEMBL
      A0A5F9D7J9, G1SPI3
      Related
      ENSOCUP00000004956.2
      Conserved Domains (4) summary
      cd05528
      Location:960 → 1071
      Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
      smart00382
      Location:433 → 574
      AAA; ATPases associated with a variety of cellular activities
      COG5076
      Location:852 → 1115
      COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
      pfam00004
      Location:438 → 572
      AAA; ATPase family associated with various cellular activities (AAA)

    5. XM_051843172.1 → XP_051699132.1  ATPase family AAA domain-containing protein 2B isoform X5

    6. XM_051843173.1 → XP_051699133.1  ATPase family AAA domain-containing protein 2B isoform X6

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials