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    SUPT3H SPT3 homolog, SAGA and STAGA complex component [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100338662, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SUPT3H
    Gene description
    SPT3 homolog, SAGA and STAGA complex component
    See related
    Ensembl:ENSOCUG00000014574
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT3H in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 12 NC_067385.1 (121157337..121649632)

    Chromosome 12 - NC_067385.1Genomic Context describing neighboring genes Neighboring gene chloride intracellular channel 5 Neighboring gene RUNX family transcription factor 2 Neighboring gene uncharacterized LOC103349765 Neighboring gene uncharacterized LOC127493292 Neighboring gene uncharacterized LOC127493293 Neighboring gene uncharacterized LOC127493322 Neighboring gene renalase-like Neighboring gene casein kinase I-like Neighboring gene F-actin-capping protein subunit alpha-1-like Neighboring gene cell division cycle 5 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067385.1 Chromosome 12 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protection against beta-amyloid-induced apoptosis by peptides interacting with beta-amyloid. Nelson TJ, et al. J Biol Chem, 2007 Oct 26. PMID 17761669

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation protein SPT3 homolog
    Names
    suppressor of Ty 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067385.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      121157337..121649632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008262998.3 → XP_008261220.1  transcription initiation protein SPT3 homolog isoform X1

      See identical proteins and their annotated locations for XP_008261220.1

      UniProtKB/TrEMBL
      A0A5F9CFF8, G1T7P0
      Conserved Domains (2) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit
      cl02176
      Location:275 → 294
      TAF11; TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    2. XM_008262999.3 → XP_008261221.1  transcription initiation protein SPT3 homolog isoform X1

      See identical proteins and their annotated locations for XP_008261221.1

      UniProtKB/TrEMBL
      A0A5F9CFF8, G1T7P0
      Related
      ENSOCUP00000012528.3
      Conserved Domains (2) summary
      pfam02269
      Location:24 → 116
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit
      cl02176
      Location:275 → 294
      TAF11; TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    3. XM_051855681.1 → XP_051711641.1  transcription initiation protein SPT3 homolog isoform X2

    Nucleotide Protein
    Heading Accession and Version

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