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    ECM1 extracellular matrix protein 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100338579, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ECM1
    Gene description
    extracellular matrix protein 1
    See related
    Ensembl:ENSOCUG00000011786
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See ECM1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 13 NC_067386.1 (41838134..41844787, complement)

    Chromosome 13 - NC_067386.1Genomic Context describing neighboring genes Neighboring gene ADAMTS like 4 Neighboring gene MCL1 apoptosis regulator, BCL2 family member Neighboring gene uncharacterized LOC127493562 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene uncharacterized LOC127493563

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067386.1 Chromosome 13 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of bone mineralization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extracellular matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067386.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      41838134..41844787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017345909.2 → XP_017201398.1  extracellular matrix protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A5F9DBU4

    2. XM_017345908.2 → XP_017201397.1  extracellular matrix protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A5F9DBU4

    3. XM_008264486.3 → XP_008262708.1  extracellular matrix protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A5F9DG54
      Related
      ENSOCUP00000044795.1
      Conserved Domains (2) summary
      pfam01044
      Location:59 → 132
      Vinculin; Vinculin family
      pfam05782
      Location:5 → 438
      ECM1; Extracellular matrix protein 1 (ECM1)

    4. XM_008264483.3 → XP_008262705.1  extracellular matrix protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A5F9DBU4, G1T1Z5
      Related
      ENSOCUP00000010132.4
      Conserved Domains (2) summary
      pfam01044
      Location:59 → 132
      Vinculin; Vinculin family
      pfam05782
      Location:5 → 563
      ECM1; Extracellular matrix protein 1 (ECM1)

    5. XM_008264482.3 → XP_008262704.1  extracellular matrix protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F9DBU4
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 596
      ECM1; Extracellular matrix protein 1 (ECM1)

    6. XM_008264485.3 → XP_008262707.1  extracellular matrix protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A5F9DG54
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 472
      ECM1; Extracellular matrix protein 1 (ECM1)

    7. XM_008264481.3 → XP_008262703.1  extracellular matrix protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F9DBU4
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 597
      ECM1; Extracellular matrix protein 1 (ECM1)
    Nucleotide Protein
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