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    BATF basic leucine zipper ATF-like transcription factor [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100338089, updated on 8-Mar-2024

    Summary

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    Gene symbol
    BATF
    Gene description
    basic leucine zipper ATF-like transcription factor
    See related
    Ensembl:ENSOCUG00000026625
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See BATF in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 20 NC_067393.1 (29245911..29266854, complement)

    Chromosome 20 - NC_067393.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127484602 Neighboring gene ergosterol biosynthesis 28 homolog Neighboring gene FLVCR choline and putative heme transporter 2 Neighboring gene uncharacterized LOC127484603 Neighboring gene uncharacterized LOC127484623 Neighboring gene uncharacterized LOC127484624 Neighboring gene Jun dimerization protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067393.1 Chromosome 20 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic leucine zipper transcriptional factor ATF-like
    Names
    basic leucine zipper transcription factor, ATF-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067393.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      29245911..29266854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002719638.4 → XP_002719684.1  basic leucine zipper transcriptional factor ATF-like isoform X1

      UniProtKB/TrEMBL
      G1TV09
      Related
      ENSOCUP00000020888.1
      Conserved Domains (1) summary
      cd14701
      Location:26 → 83
      bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain

    2. XM_017349492.2 → XP_017204981.1  basic leucine zipper transcriptional factor ATF-like isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials