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    USP9Y ubiquitin specific peptidase 9, Y-linked [ Bos taurus (domestic cattle) ]

    Gene ID: 100271721, updated on 10-Oct-2024

    Summary

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    Gene symbol
    USP9Y
    Gene description
    ubiquitin specific peptidase 9, Y-linked
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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    Genomic context

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    See USP9Y in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) Y NC_082638.1 (7120084..7247224, complement)

    Chromosome Y - NC_082638.1Genomic Context describing neighboring genes Neighboring gene Y-linked oral-facial-digital syndrome 1 pseudogene Neighboring gene oral-facial-digital syndrome 1 Y-linked Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial pseudogene Neighboring gene zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 Neighboring gene neuronal membrane glycoprotein M6-b-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_082638.1 Chromosome Y Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel USP9Y polymorphism allowing a rapid and unambiguous classification of Bos taurus Y chromosomes into haplogroups. Bonfiglio S, et al. Anim Genet, 2012 Oct. PMID 22497446
    2. Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes. Van Laere AS, et al. Genome Res, 2008 Dec. PMID 18981267, Free PMC Article
    3. Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Bellott DW, et al. Nature, 2014 Apr 24. PMID 24759411, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ubiquitin carboxyl-terminal hydrolase FAF-Y
    Names
    ubiquitin specific peptidase 9, Y chromosome
    ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila)
    NP_001138981.1
    XP_059739948.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145509.2 → NP_001138981.1  probable ubiquitin carboxyl-terminal hydrolase FAF-Y

      See identical proteins and their annotated locations for NP_001138981.1

      Status: VALIDATED

      Source sequence(s)
      CP128563
      UniProtKB/TrEMBL
      B7TCH8, C0KTK9
      Conserved Domains (3) summary
      cd02659
      Location:1555 → 1958
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2095 → 2474
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:880 → 963
      Ubl1_cv_Nsp3_N-like; first ubiquitin-like (Ubl) domain located at the N-terminus of coronavirus SARS-CoV non-structural protein 3 (Nsp3) and related proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_082638.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7120084..7247224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883965.1 → XP_059739948.1  probable ubiquitin carboxyl-terminal hydrolase FAF-Y isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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