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    LGALS7 galectin 7 [ Sus scrofa (pig) ]

    Gene ID: 100217394, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LGALS7
    Gene description
    galectin 7
    See related
    Ensembl:ENSSSCG00000024281
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    LGALS7B
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See LGALS7 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (47588983..47604520, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (43151691..43230013)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene actinin alpha 4 Neighboring gene uncharacterized LOC110260982 Neighboring gene calpain 12 Neighboring gene galectin-7-like Neighboring gene galectin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells. Rondanino C, et al. Am J Physiol Renal Physiol, 2011 Sep. PMID 21677144, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells.
      Title: Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galectin-7
    Names
    galectin 7B
    lectin, galactoside-binding, soluble, 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142843.1 → NP_001136315.1  galectin-7

      See identical proteins and their annotated locations for NP_001136315.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ424705
      UniProtKB/TrEMBL
      A0A287AQJ8, A0A4X1T2P6, B7U2G7, I3LQK7
      Related
      ENSSSCP00000026387.4, ENSSSCT00000025965.4
      Conserved Domains (1) summary
      cd00070
      Location:7 → 136
      GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      47588983..47604520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021093250.1 → XP_020948909.1  galectin-7 isoform X1

      UniProtKB/TrEMBL
      A0A287AQJ8, A0A4X1T2P6, B7U2G7, I3LQK7
      Conserved Domains (1) summary
      cd00070
      Location:7 → 136
      GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...

    2. XM_021093249.1 → XP_020948908.1  galectin-7 isoform X1

      UniProtKB/TrEMBL
      A0A287AQJ8, A0A4X1T2P6, B7U2G7, I3LQK7
      Conserved Domains (1) summary
      cd00070
      Location:7 → 136
      GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...
    Nucleotide Protein
    Heading Accession and Version

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