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    TEF TEF transcription factor, PAR bZIP family member [ Ovis aries (sheep) ]

    Gene ID: 100192430, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TEF
    Gene description
    TEF transcription factor, PAR bZIP family member
    See related
    EnsemblRapid:ENSOARG00020036011
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs
    human mouse all
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    Genomic context

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    See TEF in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 3 NC_056056.1 (218324242..218347386)

    Chromosome 3 - NC_056056.1Genomic Context describing neighboring genes Neighboring gene Ran GTPase activating protein 1 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene uncharacterized LOC121819235 Neighboring gene uncharacterized LOC121819234 Neighboring gene transducer of ERBB2, 2 Neighboring gene PHD finger protein 5A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056056.1 Chromosome 3 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A molecular switch for photoperiod responsiveness in mammals. Dardente H, et al. Curr Biol, 2010 Dec 21. PMID 21129971
    2. Implication of the F-Box Protein FBXL21 in circadian pacemaker function in mammals. Dardente H, et al. PLoS One, 2008. PMID 18953409, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thyrotroph embryonic factor
    Names
    TEF, PAR bZIP transcription factor
    thyrotrophic embryonic factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001139451.1 → NP_001132923.1  thyrotroph embryonic factor

      See identical proteins and their annotated locations for NP_001132923.1

      Status: PROVISIONAL

      Source sequence(s)
      EU293837
      UniProtKB/TrEMBL
      A0A6P3CX66, B6CM54
      Related
      ENSOARP00020053992.1, ENSOART00020051295.1
      Conserved Domains (1) summary
      cd14695
      Location:232 → 290
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Genomic

    1. NC_056056.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

      Range
      218324242..218347386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015093768.3 → XP_014949254.1  thyrotroph embryonic factor isoform X1

      Conserved Domains (1) summary
      cd14695
      Location:219 → 277
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

    2. XM_015093770.3 → XP_014949256.1  thyrotroph embryonic factor isoform X2

      UniProtKB/TrEMBL
      A0A6P3YJS7, D7RFH8
      Related
      ENSOARP00020043063.1, ENSOART00020080344.1
      Conserved Domains (1) summary
      cd14695
      Location:214 → 272
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
    Nucleotide Protein Strain
    Heading Accession and Version

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