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    ITGA6 integrin subunit alpha 6 [ Sus scrofa (pig) ]

    Gene ID: 100158200, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ITGA6provided by VGNC
    Official Full Name
    integrin subunit alpha 6provided by VGNC
    Primary source
    VGNC:VGNC:96378
    See related
    Ensembl:ENSSSCG00000015955
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in kidney (RPKM 38.3), ovary (RPKM 30.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ITGA6 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (78504108..78591779)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (87830665..87901323)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257106 Neighboring gene distal-less homeobox 2 Neighboring gene uncharacterized LOC106508120 Neighboring gene uncharacterized LOC110256990 Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene Rap guanine nucleotide exchange factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion mediated by integrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leukocyte migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of integrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: integrin alpha-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      78504108..78591779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021076079.1 → XP_020931738.1  LOW QUALITY PROTEIN: integrin alpha-6

      UniProtKB/TrEMBL
      A0A480T9L0
      Related
      ENSSSCP00000031111.3, ENSSSCT00000033486.4
      Conserved Domains (2) summary
      smart00191
      Location:374 → 425
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam08441
      Location:464 → 939
      Integrin_alpha2; Integrin alpha
    Nucleotide Protein
    Heading Accession and Version

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