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    RSPH9 radial spoke head component 9 [ Sus scrofa (pig) ]

    Gene ID: 100157153, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RSPH9provided by VGNC
    Official Full Name
    radial spoke head component 9provided by VGNC
    Primary source
    VGNC:VGNC:92482
    See related
    Ensembl:ENSSSCG00000001691
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in lung (RPKM 1.9), ovary (RPKM 1.1) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RSPH9 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (38624942..38641410)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (44208277..44223937)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene DNA polymerase eta Neighboring gene GTP binding protein 2 Neighboring gene MAD2L1 binding protein Neighboring gene mitochondrial ribosomal protein S18A Neighboring gene uncharacterized LOC106504420

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cilium movement involved in cell motility IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in motile cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    radial spoke head protein 9 homolog
    Names
    radial spoke head 9 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      38624942..38641410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001929514.5 → XP_001929549.1  radial spoke head protein 9 homolog isoform X1

      UniProtKB/TrEMBL
      A0A4X1V3K4, A0A8D0K4D1, A0A8D1RUN9, F1RRH7
      Related
      ENSSSCP00000001841.2, ENSSSCT00000001888.5
      Conserved Domains (1) summary
      pfam04712
      Location:235 → 274
      Radial_spoke; Radial spokehead-like protein

    2. XM_005666046.3 → XP_005666103.1  radial spoke head protein 9 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8D1RUN9
      Conserved Domains (1) summary
      pfam04712
      Location:17 → 60
      Radial_spoke; Radial spokehead-like protein
    Nucleotide Protein
    Heading Accession and Version

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