GYS2 glycogen synthase 2 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: GYS2provided by VGNC
Official Full Name: glycogen synthase 2provided by VGNC
Primary source: VGNC:VGNC:88761
See related: Ensembl:ENSSSCG00000000577
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Biased expression in liver (RPKM 89.1), mixtures (RPKM 31.1) and 1 other tissue See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	5	NC_010447.5 (51862952..51915153)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	5	NC_010447.4 (55129103..55191552)

Chromosome 5 - NC_010447.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

GYS2 was expressed specifically in liver and subcutaneous adipose tissue
Title: Molecular and functional characterization of glycogen synthase in the porcine satellite cells under insulin treatment.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in glycogen biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: glycogen [starch] synthase, liver

NP_001182440.1

EC 2.4.1.11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001195511.1 → NP_001182440.1 glycogen [starch] synthase, liver

See identical proteins and their annotated locations for NP_001182440.1

Status: PROVISIONAL

Source sequence(s)

GQ845036

UniProtKB/TrEMBL

A0A8D2BZH7, E0X6R4

Related

ENSSSCP00000051471.3, ENSSSCT00000036982.3

Conserved Domains (2) summary

cd03793
Location:26 → 614

GT1_Glycogen_synthase_GSY2_like; Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the ...

pfam05693
Location:31 → 661

Glycogen_syn; Glycogen synthase