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    UBE2Q1 ubiquitin conjugating enzyme E2 Q1 [ Sus scrofa (pig) ]

    Gene ID: 100156747, updated on 17-Aug-2024

    Summary

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    Official Symbol
    UBE2Q1provided by VGNC
    Official Full Name
    ubiquitin conjugating enzyme E2 Q1provided by VGNC
    Primary source
    VGNC:VGNC:98888
    See related
    Ensembl:ENSSSCG00000006544
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 65.3), spleen (RPKM 47.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See UBE2Q1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (95221149..95229533)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (104047154..104055539)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene adenosine deaminase RNA specific Neighboring gene uncharacterized LOC110260318 Neighboring gene cholinergic receptor nicotinic beta 2 subunit Neighboring gene tudor domain containing 10 Neighboring gene Src homology 2 domain containing E Neighboring gene interleukin 6 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      95221149..95229533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001929469.6 → XP_001929504.3  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1

      UniProtKB/TrEMBL
      A0A8W4FJ37
      Related
      ENSSSCP00000079244.1, ENSSSCT00000097105.1
      Conserved Domains (1) summary
      cl00154
      Location:253 → 409
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
    Heading Accession and Version

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