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    CIART circadian associated repressor of transcription [ Sus scrofa (pig) ]

    Gene ID: 100156195, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CIARTprovided by VGNC
    Official Full Name
    circadian associated repressor of transcriptionprovided by VGNC
    Primary source
    VGNC:VGNC:86694
    See related
    Ensembl:ENSSSCG00000038374
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 4.2), lung (RPKM 4.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CIART in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (98800849..98809573, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (108088573..108093770, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260326 Neighboring gene mitochondrial ribosomal protein S21 Neighboring gene chromosome 4 C1orf54 homolog Neighboring gene aph-1 homolog A, gamma-secretase subunit Neighboring gene carbonic anhydrase 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in circadian regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    circadian-associated transcriptional repressor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      98800849..98809573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021089912.1 → XP_020945571.1  circadian-associated transcriptional repressor isoform X1

      UniProtKB/TrEMBL
      A0A287ATR8, A0A8D0SUG2, A0A8D1EC18, F1SS75
      Conserved Domains (1) summary
      pfam15673
      Location:160 → 436
      Ciart; Circadian-associated transcriptional repressor

    2. XM_021089913.1 → XP_020945572.1  circadian-associated transcriptional repressor isoform X1

      UniProtKB/TrEMBL
      A0A287ATR8, A0A8D0SUG2, A0A8D1EC18, F1SS75
      Conserved Domains (1) summary
      pfam15673
      Location:160 → 436
      Ciart; Circadian-associated transcriptional repressor

    3. XM_005655394.3 → XP_005655451.1  circadian-associated transcriptional repressor isoform X2

      UniProtKB/TrEMBL
      A0A287B3H5, A0A8D0MAD6, A0A8D1RXA1
      Related
      ENSSSCP00000050673.1, ENSSSCT00000060285.3
      Conserved Domains (1) summary
      pfam15673
      Location:121 → 397
      DUF4664; Domain of unknown function (DUF4664)

    4. XM_005655395.3 → XP_005655452.1  circadian-associated transcriptional repressor isoform X3

      UniProtKB/TrEMBL
      A0A4X1SGQ4
      Related
      ENSSSCP00000007097.3, ENSSSCT00000007292.5
      Conserved Domains (1) summary
      pfam15673
      Location:92 → 368
      DUF4664; Domain of unknown function (DUF4664)
    Nucleotide Protein
    Heading Accession and Version

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