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    LINGO1 leucine rich repeat and Ig domain containing 1 [ Sus scrofa (pig) ]

    Gene ID: 100155465, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LINGO1provided by VGNC
    Official Full Name
    leucine rich repeat and Ig domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:89733
    See related
    Ensembl:ENSSSCG00000001872
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in mixtures (RPKM 3.4), longissimus dorsi muscle (RPKM 2.5) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See LINGO1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (57684591..57890121, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (62376757..62583077, complement)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial pseudogene Neighboring gene high mobility group 20A Neighboring gene uncharacterized LOC102167731 Neighboring gene ciliary microtubule associated protein 1C Neighboring gene chondroitin sulfate proteoglycan 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      57684591..57890121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005666135.3 → XP_005666192.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005666192.1

      UniProtKB/TrEMBL
      A0A287ACU9
      Related
      ENSSSCP00000041802.1, ENSSSCT00000054117.1
      Conserved Domains (4) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      COG4886
      Location:60 → 365
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      cl11960
      Location:433 → 508
      Ig; Immunoglobulin domain

    2. XM_021099021.1 → XP_020954680.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A287ACU9
      Related
      ENSSSCP00000065212.1, ENSSSCT00000088136.1
      Conserved Domains (4) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      COG4886
      Location:60 → 365
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      cl11960
      Location:433 → 508
      Ig; Immunoglobulin domain

    3. XM_005666134.3 → XP_005666191.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005666191.1

      UniProtKB/TrEMBL
      A0A287ACU9
      Conserved Domains (4) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      COG4886
      Location:60 → 365
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      cl11960
      Location:433 → 508
      Ig; Immunoglobulin domain

    4. XM_001929187.6 → XP_001929222.3  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      F1SJ87
      Related
      ENSSSCP00000002047.3, ENSSSCT00000002097.5
      Conserved Domains (6) summary
      smart00410
      Location:432 → 514
      IG_like; Immunoglobulin like
      cd00116
      Location:76 → 385
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:73 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:120 → 179
      LRR_8; Leucine rich repeat
      cl11960
      Location:439 → 514
      Ig; Immunoglobulin domain
      cl15307
      Location:369 → 405
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
    Nucleotide Protein
    Heading Accession and Version

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