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    SENP6 SUMO specific peptidase 6 [ Sus scrofa (pig) ]

    Gene ID: 100155462, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SENP6provided by VGNC
    Official Full Name
    SUMO specific peptidase 6provided by VGNC
    Primary source
    VGNC:VGNC:92715
    See related
    Ensembl:ENSSSCG00000020702
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 19.4), kidney (RPKM 18.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SENP6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (90166997..90299981, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (101173638..101227393, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene interphotoreceptor matrix proteoglycan 1 Neighboring gene myosin VI Neighboring gene filamin A interacting protein 1 Neighboring gene transmembrane protein 30A Neighboring gene cytochrome c oxidase subunit 7A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SUMO-specific endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein desumoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of kinetochore assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sentrin-specific protease 6
    Names
    SUMO1/sentrin specific peptidase 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      90166997..90299981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021092294.1 → XP_020947953.1  sentrin-specific protease 6 isoform X1

      UniProtKB/TrEMBL
      A0A480EAV1, A0A8D1CQ24
      Conserved Domains (2) summary
      COG5160
      Location:693 → 805
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:1005 → 1081
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    2. XM_021092296.1 → XP_020947955.1  sentrin-specific protease 6 isoform X2

      UniProtKB/TrEMBL
      A0A287B4X5, A0A287B972, A0A4X1UYB9
      Related
      ENSSSCP00000051148.3, ENSSSCT00000058321.3
      Conserved Domains (2) summary
      COG5160
      Location:664 → 776
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:976 → 1052
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    3. XM_021092302.1 → XP_020947961.1  sentrin-specific protease 6 isoform X3

      UniProtKB/TrEMBL
      A0A4X1UYB9
      Conserved Domains (2) summary
      COG5160
      Location:657 → 769
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:969 → 1045
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    4. XM_021092307.1 → XP_020947966.1  sentrin-specific protease 6 isoform X4

      UniProtKB/TrEMBL
      A0A480EAV1, A0A8D1CQ24, A0A8D1T982
      Conserved Domains (2) summary
      COG5160
      Location:592 → 704
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:904 → 980
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    5. XM_021092309.1 → XP_020947968.1  sentrin-specific protease 6 isoform X4

      UniProtKB/TrEMBL
      A0A480EAV1, A0A8D1CQ24, A0A8D1T982
      Conserved Domains (2) summary
      COG5160
      Location:592 → 704
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:904 → 980
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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