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    RUNX1T1 RUNX1 partner transcriptional co-repressor 1 [ Sus scrofa (pig) ]

    Gene ID: 100155449, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RUNX1T1provided by VGNC
    Official Full Name
    RUNX1 partner transcriptional co-repressor 1provided by VGNC
    Primary source
    VGNC:VGNC:96594
    See related
    Ensembl:ENSSSCG00000006115
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in ovary (RPKM 6.6), lung (RPKM 2.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RUNX1T1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (44600292..44745954)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (48029947..48172694)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene triple QxxK/R motif containing Neighboring gene protein S100-A16 pseudogene Neighboring gene uncharacterized LOC110260259 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC5-like Neighboring gene chromobox protein homolog 3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: protein CBFA2T1
    Names
    RUNX1 translocation partner 1
    protein CBFA2T1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      44600292..44745954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021089123.1 → XP_020944782.1  LOW QUALITY PROTEIN: protein CBFA2T1

      UniProtKB/TrEMBL
      A0A8W4F8X1
      Related
      ENSSSCP00000006525.5, ENSSSCT00000006707.5
      Conserved Domains (4) summary
      pfam01753
      Location:574 → 610
      zf-MYND; MYND finger
      pfam07531
      Location:181 → 267
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:396 → 462
      NHR2; NHR2 domain like
      cl25642
      Location:526 → 663
      DUF390; Protein of unknown function (DUF390)
    Nucleotide Protein
    Heading Accession and Version

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