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    PGAM1 phosphoglycerate mutase 1 [ Sus scrofa (pig) ]

    Gene ID: 100154776, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PGAM1
    Gene description
    phosphoglycerate mutase 1
    See related
    Ensembl:ENSSSCG00000010517
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in heart (RPKM 168.4), kidney (RPKM 152.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PGAM1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (108822782..108832818)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (118326760..118336762)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene FRAT regulator of WNT signaling pathway 2 Neighboring gene ribosomal RNA processing 12 homolog Neighboring gene exosome component 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intramolecular phosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoglycerate mutase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      108822782..108832818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003483535.4 → XP_003483583.1  phosphoglycerate mutase 1

      See identical proteins and their annotated locations for XP_003483583.1

      UniProtKB/TrEMBL
      A0A287AJQ2, A0A4X1UA74, A0A8D0M8T3
      Related
      ENSSSCP00000044127.1, ENSSSCT00000049238.2
      Conserved Domains (1) summary
      PRK14115
      Location:4 → 253
      gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase
    Nucleotide Protein
    Heading Accession and Version

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