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    ATP6V0A2 ATPase H+ transporting V0 subunit a2 [ Sus scrofa (pig) ]

    Gene ID: 100154525, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATP6V0A2provided by VGNC
    Official Full Name
    ATPase H+ transporting V0 subunit a2provided by VGNC
    Primary source
    VGNC:VGNC:85664
    See related
    Ensembl:ENSSSCG00000009766
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 10.3), lung (RPKM 6.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V0A2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (29250400..29297697, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (30944213..30989982, complement)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene zinc finger protein 664 Neighboring gene coiled-coil domain containing 92 Neighboring gene dynein axonemal heavy chain 10 Neighboring gene SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae) Neighboring gene tectonic family member 2 Neighboring gene general transcription factor IIH subunit 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase 116 kDa subunit a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      29250400..29297697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021072229.1 → XP_020927888.1  V-type proton ATPase 116 kDa subunit a isoform X1

      UniProtKB/TrEMBL
      A0A8D0ZNW6
      Conserved Domains (1) summary
      pfam01496
      Location:27 → 876
      V_ATPase_I; V-type ATPase 116kDa subunit family

    2. XM_013982778.2 → XP_013838232.1  V-type proton ATPase 116 kDa subunit a isoform X2

      UniProtKB/TrEMBL
      A0A0B8RTW9, A0A480UG97, A0A4X1UMB6, A0A8D0ZNW6, A0A8D2C4S1, F1RFL9
      Related
      ENSSSCP00000010430.4, ENSSSCT00000010708.6
      Conserved Domains (2) summary
      COG1269
      Location:5 → 843
      NtpI; Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion]
      pfam01496
      Location:28 → 842
      V_ATPase_I; V-type ATPase 116kDa subunit family
    Nucleotide Protein Strain
    Heading Accession and Version

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