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    TRIM9 tripartite motif containing 9 [ Sus scrofa (pig) ]

    Gene ID: 100153738, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM9provided by VGNC
    Official Full Name
    tripartite motif containing 9provided by VGNC
    Primary source
    VGNC:VGNC:94434
    See related
    Ensembl:ENSSSCG00000005025
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in mixtures (RPKM 2.4), ovary (RPKM 1.4) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (180723281..180830555, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (201010831..201116480, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ninein Neighboring gene translation initiation factor IF-2-like Neighboring gene abhydrolase domain containing 12B Neighboring gene glycogen phosphorylase L Neighboring gene uncharacterized LOC106509104 Neighboring gene cleavage and polyadenylation specificity factor subunit 7 pseudogene Neighboring gene thioredoxin related transmembrane protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      180723281..180830555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021101798.1 → XP_020957457.1  E3 ubiquitin-protein ligase TRIM9 isoform X9

      UniProtKB/TrEMBL
      A0A8D0WB08
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529 → 682
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    2. XM_013993398.2 → XP_013848852.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

      UniProtKB/TrEMBL
      A0A4X1SDS7, A0A8D0WBT7
      Related
      ENSSSCP00000081106.1, ENSSSCT00000100609.1
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      smart00184
      Location:10 → 38
      RING; Ring finger
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620 → 767
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

    3. XM_013993397.2 → XP_013848851.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

      UniProtKB/TrEMBL
      A0A8D0WBT7
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      smart00184
      Location:10 → 38
      RING; Ring finger
      cd00063
      Location:449 → 528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:616 → 781
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

    4. XM_013993399.2 → XP_013848853.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

      UniProtKB/TrEMBL
      A0A4X1SDU8, A0A8D0WB08
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      smart00184
      Location:10 → 38
      RING; Ring finger
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529 → 708
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

    5. XM_021101763.1 → XP_020957422.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

      UniProtKB/TrEMBL
      A0A4X1SDU2, A0A8D0WBT7
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:606 → 771
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    6. XM_013993396.2 → XP_013848850.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

      UniProtKB/TrEMBL
      A0A8D0PV30, A0A8D0WBT7, A0A8W4F9F1
      Related
      ENSSSCP00000074916.1, ENSSSCT00000092112.1
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      smart00184
      Location:10 → 38
      RING; Ring finger
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620 → 785
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

    7. XM_001928211.5 → XP_001928246.3  E3 ubiquitin-protein ligase TRIM9 isoform X7

      UniProtKB/TrEMBL
      A0A4X1SDQ9, A0A8D0WB08, F1SFF7
      Related
      ENSSSCP00000005403.2, ENSSSCT00000005541.3
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      smart00184
      Location:10 → 38
      RING; Ring finger
      cd00063
      Location:453 → 532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529 → 700
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

    8. XM_021101773.1 → XP_020957432.1  E3 ubiquitin-protein ligase TRIM9 isoform X5

      UniProtKB/TrEMBL
      A0A8D0TIM3, A0A8W4FRA7
      Conserved Domains (5) summary
      smart00502
      Location:206 → 332
      BBC; B-Box C-terminal domain
      smart00336
      Location:157 → 199
      BBOX; B-Box-type zinc finger
      cd00063
      Location:386 → 465
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:553 → 718
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cl17238
      Location:55 → 67
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    9. XM_021101794.1 → XP_020957453.1  E3 ubiquitin-protein ligase TRIM9 isoform X8

      UniProtKB/TrEMBL
      A0A8D0WB08, A0A8D1KV61
      Conserved Domains (5) summary
      smart00502
      Location:273 → 399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224 → 266
      BBOX; B-Box-type zinc finger
      cd00063
      Location:449 → 528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:525 → 696
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:5 → 52
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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