U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SPATA7 spermatogenesis associated 7 [ Sus scrofa (pig) ]

    Gene ID: 100153278, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SPATA7provided by VGNC
    Official Full Name
    spermatogenesis associated 7provided by VGNC
    Primary source
    VGNC:VGNC:93389
    See related
    Ensembl:ENSSSCG00000002424
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 10.3), kidney (RPKM 1.1) and 4 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SPATA7 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (110309414..110368370)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (116807810..116862438)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504523 Neighboring gene G protein-coupled receptor 65 Neighboring gene potassium two pore domain channel subfamily K member 10 Neighboring gene protein tyrosine phosphatase non-receptor type 21 Neighboring gene zinc finger CCCH-type containing 14 Neighboring gene EMAP like 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photoreceptor cell maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to photoreceptor connecting cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor distal connecting cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in rod photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    spermatogenesis-associated protein 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177908.1 → NP_001171379.1  spermatogenesis-associated protein 7

      See identical proteins and their annotated locations for NP_001171379.1

      Status: PROVISIONAL

      Source sequence(s)
      GU475000
      UniProtKB/TrEMBL
      A0A8D0ZRS7, A0A8D1UMF8, D5K898, F1SDZ0
      Related
      ENSSSCP00000002624.2, ENSSSCT00000002693.3
      Conserved Domains (1) summary
      pfam15244
      Location:10 → 403
      HSD3; Spermatogenesis-associated protein 7, or HSD3

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      110309414..110368370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013978348.2 → XP_013833802.1  spermatogenesis-associated protein 7 isoform X2

      UniProtKB/TrEMBL
      A0A287AIW7, A0A8D0QIX4, A0A8D2C9Q0
      Conserved Domains (1) summary
      pfam15244
      Location:10 → 371
      HSD3; Spermatogenesis-associated protein 7, or HSD3

    2. XM_013978347.2 → XP_013833801.1  spermatogenesis-associated protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SY44, A0A8D0UGK5
      Conserved Domains (1) summary
      pfam15244
      Location:10 → 385
      HSD3; Spermatogenesis-associated protein 7, or HSD3

    3. XM_021098001.1 → XP_020953660.1  spermatogenesis-associated protein 7 isoform X3

      UniProtKB/TrEMBL
      A0A286ZW58, A0A4X1SXF1, A0A8D0ZN97
      Conserved Domains (1) summary
      pfam15244
      Location:10 → 361
      HSD3; Spermatogenesis-associated protein 7, or HSD3

    4. XM_013978349.2 → XP_013833803.1  spermatogenesis-associated protein 7 isoform X4

      UniProtKB/TrEMBL
      A0A8D1CI97
      Conserved Domains (1) summary
      pfam15244
      Location:1 → 330
      HSD3; Spermatogenesis-associated protein 7, or HSD3
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.