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    ACOT6 acyl-CoA thioesterase 6 [ Sus scrofa (pig) ]

    Gene ID: 100152868, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ACOT6provided by VGNC
    Official Full Name
    acyl-CoA thioesterase 6provided by VGNC
    Primary source
    VGNC:VGNC:107121
    See related
    Ensembl:ENSSSCG00000002348
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 11.9), liver (RPKM 9.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ACOT6 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (96984547..96990400)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (102742804..102785288, complement)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A thioesterase 4-like Neighboring gene uncharacterized LOC106507740 Neighboring gene acyl-coenzyme A thioesterase 4 Neighboring gene dynein axonemal light chain 1 Neighboring gene PNMA family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acyl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acyl-CoA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative acyl-coenzyme A thioesterase 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      96984547..96990400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001929018.5 → XP_001929053.1  putative acyl-coenzyme A thioesterase 6

      UniProtKB/TrEMBL
      A0A4X1TMR0, A0A8D1AM32, A0A8D1KX42
      Related
      ENSSSCP00000064983.2, ENSSSCT00000071335.2
      Conserved Domains (3) summary
      pfam04775
      Location:17 → 136
      Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
      pfam08840
      Location:203 → 412
      BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal
      cl21494
      Location:145 → 253
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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