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    BLNK B cell linker [ Sus scrofa (pig) ]

    Gene ID: 100152350, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BLNKprovided by VGNC
    Official Full Name
    B cell linkerprovided by VGNC
    Primary source
    VGNC:VGNC:85829
    See related
    Ensembl:ENSSSCG00000010504
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 24.2), lung (RPKM 9.3) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BLNK in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (107630477..107715421, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (117265086..117349989, complement)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 2B Neighboring gene uncharacterized LOC110256636 Neighboring gene cyclin J Neighboring gene zinc finger protein 518A Neighboring gene DNA nucleotidylexotransferase Neighboring gene oligodendrocytic myelin paranodal and inner loop protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell linker protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      107630477..107715421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001928233.5 → XP_001928268.1  B-cell linker protein

      See identical proteins and their annotated locations for XP_001928268.1

      UniProtKB/TrEMBL
      A0A0B8S0B4, A0A480F4D4, A0A4X1UGW7, A0A8D0MR69, A0A8D0W3D3
      Related
      ENSSSCP00000063770.1, ENSSSCT00000075374.1
      Conserved Domains (1) summary
      cd09929
      Location:343 → 461
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
    Nucleotide Protein Strain
    Heading Accession and Version

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