U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    GPR4 G protein-coupled receptor 4 [ Sus scrofa (pig) ]

    Gene ID: 100144489, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GPR4provided by VGNC
    Official Full Name
    G protein-coupled receptor 4provided by VGNC
    Primary source
    VGNC:VGNC:88631
    See related
    Ensembl:ENSSSCG00000037184
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 4.2), lung (RPKM 3.3) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GPR4 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (51968310..51979931, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003537267.1 (42699..43786, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261012 Neighboring gene vasodilator stimulated phosphoprotein Neighboring gene outer mitochondrial membrane lipid metabolism regulator OPA3 Neighboring gene EMAP like 2 Neighboring gene gastric inhibitory polypeptide receptor

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Isolation of a novel G protein-coupled receptor (GPR4) localized to chromosome 19q13.3. Mahadevan MS, et al. Genomics, 1995 Nov 1. PMID 8595909
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    G-protein coupled receptor 4
    Names
    G-protein coupled receptor 19

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123118.1 → NP_001116590.1  G-protein coupled receptor 4

      See identical proteins and their annotated locations for NP_001116590.1

      Status: PROVISIONAL

      Source sequence(s)
      U22108
      UniProtKB/Swiss-Prot
      P50132
      Conserved Domains (2) summary
      pfam00001
      Location:35 → 286
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:26 → 168
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      51968310..51979931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021093218.1 → XP_020948877.1  G-protein coupled receptor 4 isoform X1

      UniProtKB/Swiss-Prot
      A0A287AXR9, P50132
      Conserved Domains (1) summary
      cd15366
      Location:18 → 297
      7tmA_GPR4; proton-sensing G protein-coupled receptor 4, member of the class A family of seven-transmembrane G protein-coupled receptors

    2. XM_021093217.1 → XP_020948876.1  G-protein coupled receptor 4 isoform X1

      UniProtKB/Swiss-Prot
      A0A287AXR9, P50132
      Related
      ENSSSCP00000048942.1, ENSSSCT00000048531.3
      Conserved Domains (1) summary
      cd15366
      Location:18 → 297
      7tmA_GPR4; proton-sensing G protein-coupled receptor 4, member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P50132.2 GenPept UniProtKB/Swiss-Prot:P50132

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials