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    SLCO1C1 solute carrier organic anion transporter family member 1C1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100144344, updated on 10-Oct-2024

    Summary

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    Gene symbol
    SLCO1C1
    Gene description
    solute carrier organic anion transporter family member 1C1
    See related
    Ensembl:ENSOCUG00000007487
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SLCO1C1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 8 NC_067381.1 (92636471..92697040)

    Chromosome 8 - NC_067381.1Genomic Context describing neighboring genes Neighboring gene nucleosome assembly protein 1-like 1 Neighboring gene phosphodiesterase 3A Neighboring gene ADP-ribosylation factor 1 Neighboring gene solute carrier organic anion transporter family member 1B3 Neighboring gene solute carrier organic anion transporter family member 1A2 Neighboring gene islet amyloid polypeptide

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067381.1 Chromosome 8 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables bile acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium-independent organic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in bile acid and bile salt transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium-independent organic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier organic anion transporter family member 1C1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067381.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      92636471..92697040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008259571.3 → XP_008257793.1  solute carrier organic anion transporter family member 1C1 isoform X1

      See identical proteins and their annotated locations for XP_008257793.1

      UniProtKB/TrEMBL
      G1ST61
      Related
      ENSOCUP00000006479.3
      Conserved Domains (3) summary
      cd06174
      Location:46 → 446
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd01330
      Location:472 → 525
      KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
      pfam03137
      Location:44 → 638
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    2. XM_017343353.2 → XP_017198842.1  solute carrier organic anion transporter family member 1C1 isoform X2

      UniProtKB/TrEMBL
      G1ST61

    3. XM_002712730.4 → XP_002712776.1  solute carrier organic anion transporter family member 1C1 isoform X1

      See identical proteins and their annotated locations for XP_002712776.1

      UniProtKB/TrEMBL
      G1ST61
      Conserved Domains (3) summary
      cd06174
      Location:46 → 446
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd01330
      Location:472 → 525
      KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
      pfam03137
      Location:44 → 638
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    4. XM_051850839.1 → XP_051706799.1  solute carrier organic anion transporter family member 1C1 isoform X3

    5. XM_051850838.1 → XP_051706798.1  solute carrier organic anion transporter family member 1C1 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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