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    USP13 ubiquitin specific peptidase 13 [ Bos taurus (domestic cattle) ]

    Gene ID: 100141289, updated on 4-Oct-2024

    Summary

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    Official Symbol
    USP13provided by VGNC
    Official Full Name
    ubiquitin specific peptidase 13provided by VGNC
    Primary source
    VGNC:VGNC:52841
    See related
    BGD:BT16694; Ensembl:ENSBTAG00000005946
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See USP13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (87351245..87482165, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene uncharacterized LOC112447548 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene mitochondrial ribosomal protein L47 Neighboring gene actin like 6A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Bovine Genome Sequencing and Analysis Consortium, et al. Science, 2009 Apr 24. PMID 19390049, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 13
    Names
    Deubiquitinating enzyme 13
    Ubiquitin thioesterase 13
    Ubiquitin-specific-processing protease 13
    ubiquitin specific peptidase 13 (isopeptidase T-3)
    NP_001178195.1
    XP_015327854.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191266.2 → NP_001178195.1  ubiquitin carboxyl-terminal hydrolase 13

      See identical proteins and their annotated locations for NP_001178195.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000001
      UniProtKB/Swiss-Prot
      E1BMF7
      UniProtKB/TrEMBL
      A0AAA9SMR1
      Related
      ENSBTAP00000053221.2, ENSBTAT00000061390.4
      Conserved Domains (4) summary
      cd02658
      Location:337 → 859
      Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd14384
      Location:652 → 700
      UBA1_UBP13; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 13 (UBP13)
      cd14386
      Location:728 → 769
      UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
      pfam02148
      Location:211 → 284
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      87351245..87482165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015472368.3 → XP_015327854.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T7R1
      Conserved Domains (4) summary
      cd02658
      Location:284 → 806
      Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd14384
      Location:599 → 647
      UBA1_UBP13; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 13 (UBP13)
      cd14386
      Location:675 → 716
      UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
      pfam02148
      Location:158 → 231
      zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E1BMF7.2 GenPept UniProtKB/Swiss-Prot:E1BMF7

    Gene LinkOut

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