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    CYP4F52 cytochrome P450 family 4 subfamily F member 52 [ Sus scrofa (pig) ]

    Gene ID: 100113470, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CYP4F52provided by VGNC
    Official Full Name
    cytochrome P450 family 4 subfamily F member 52provided by VGNC
    Primary source
    VGNC:VGNC:104201
    See related
    Ensembl:ENSSSCG00000032765
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    CYP4F2
    Expression
    Biased expression in liver (RPKM 28.2), mixtures (RPKM 12.4) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (61745069..61759971, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (61344295..61359138, complement)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10H1 Neighboring gene olfactory receptor 1361-like Neighboring gene docosahexaenoic acid omega-hydroxylase CYP4F3-like Neighboring gene phylloquinone omega-hydroxylase CYP4F2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    docosahexaenoic acid omega-hydroxylase CYP4F3; phylloquinone omega-hydroxylase CYP4F2
    Names
    cytochrome P450, family 4, subfamily F, polypeptide 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      61745069..61759971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003123434.4 → XP_003123482.1  docosahexaenoic acid omega-hydroxylase CYP4F3 isoform X2

      UniProtKB/TrEMBL
      A0A8D0ZBZ0, A0A8D1ZB24
      Related
      ENSSSCP00000070569.2, ENSSSCT00000069249.2
      Conserved Domains (1) summary
      pfam00067
      Location:52 → 514
      p450; Cytochrome P450

    2. XM_003123433.3 → XP_003123481.1  phylloquinone omega-hydroxylase CYP4F2 isoform X1

      UniProtKB/TrEMBL
      A0A480QDV1, A0A4X1VIQ8, A0A8D0ZEF6, A0A8D1Z8S3
      Related
      ENSSSCP00000078579.1, ENSSSCT00000095159.1
      Conserved Domains (1) summary
      pfam00067
      Location:52 → 514
      p450; Cytochrome P450
    Nucleotide Protein Strain
    Heading Accession and Version

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