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    MYPN myopalladin [ Equus caballus (horse) ]

    Gene ID: 100072581, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MYPNprovided by VGNC
    Official Full Name
    myopalladinprovided by VGNC
    Primary source
    VGNC:VGNC:20524
    See related
    Ensembl:ENSECAG00000015157
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See MYPN in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (56982869..57064778)

    Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene sirtuin 1 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 4 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene atonal bHLH transcription factor 7 Neighboring gene phenazine biosynthesis like protein domain containing Neighboring gene RUN and FYVE domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009144.3 Chromosome 1 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dendrite self-avoidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myopalladin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009144.3 Reference EquCab3.0 Primary Assembly

      Range
      56982869..57064778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023644007.1 → XP_023499775.1  myopalladin isoform X2

      Conserved Domains (3) summary
      pfam07679
      Location:1071 → 1161
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:1187 → 1261
      Ig; Immunoglobulin domain
      cl26464
      Location:641 → 855
      Atrophin-1; Atrophin-1 family

    2. XM_014733228.2 → XP_014588714.1  myopalladin isoform X1

      UniProtKB/TrEMBL
      F7CVQ7
      Related
      ENSECAP00000012977.3, ENSECAT00000016087.4
      Conserved Domains (4) summary
      cd00096
      Location:1089 → 1158
      Ig; Immunoglobulin domain
      pfam07679
      Location:1071 → 1161
      I-set; Immunoglobulin I-set domain
      pfam11925
      Location:791 → 843
      DUF3443; Protein of unknown function (DUF3443)
      cl11960
      Location:1187 → 1261
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials