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    TUBE1 tubulin epsilon 1 [ Equus caballus (horse) ]

    Gene ID: 100072438, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TUBE1provided by VGNC
    Official Full Name
    tubulin epsilon 1provided by VGNC
    Primary source
    VGNC:VGNC:24659
    See related
    Ensembl:ENSECAG00000013843
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See TUBE1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (62496211..62516061, complement)

    Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene FYN proto-oncogene, Src family tyrosine kinase Neighboring gene uncharacterized LOC111775344 Neighboring gene uncharacterized LOC111775343 Neighboring gene cellular communication network factor 6 Neighboring gene family with sequence similarity 229 member B Neighboring gene laminin subunit alpha 4 Neighboring gene ret finger protein like 4B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009153.3 Chromosome 10 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin epsilon chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009153.3 Reference EquCab3.0 Primary Assembly

      Range
      62496211..62516061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023650951.1 → XP_023506719.1  tubulin epsilon chain isoform X2

      UniProtKB/TrEMBL
      A0A3Q2H0C9, F7BH90
      Related
      ENSECAP00000011737.2, ENSECAT00000014674.4
      Conserved Domains (1) summary
      cd02190
      Location:71 → 489
      epsilon_tubulin; The epsilon-tubulin family

    2. XM_023650950.1 → XP_023506718.1  tubulin epsilon chain isoform X1

      UniProtKB/TrEMBL
      A0A9L0SAC7
      Related
      ENSECAP00000070974.1, ENSECAT00000082240.1
      Conserved Domains (1) summary
      cd02190
      Location:71 → 526
      epsilon_tubulin; The epsilon-tubulin family

    3. XM_023650952.1 → XP_023506720.1  tubulin epsilon chain isoform X3

      UniProtKB/TrEMBL
      A0A3Q2H0C9
      Related
      ENSECAP00000026833.2, ENSECAT00000035227.2
      Conserved Domains (1) summary
      cd02190
      Location:26 → 429
      epsilon_tubulin; The epsilon-tubulin family
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials