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    KDM1A lysine demethylase 1A [ Equus caballus (horse) ]

    Gene ID: 100071646, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KDM1Aprovided by VGNC
    Official Full Name
    lysine demethylase 1Aprovided by VGNC
    Primary source
    VGNC:VGNC:19331
    See related
    Ensembl:ENSECAG00000019669
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (31882725..31939703, complement)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 1D Neighboring gene leucine zipper protein 1 Neighboring gene uncharacterized LOC111772421 Neighboring gene testis expressed 46

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific histone demethylase 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      31882725..31939703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023635539.1 → XP_023491307.1  lysine-specific histone demethylase 1A isoform X1

      UniProtKB/TrEMBL
      F7DIL5
      Related
      ENSECAP00000017401.3, ENSECAT00000021147.4
      Conserved Domains (2) summary
      cl26464
      Location:41 → 128
      Atrophin-1; Atrophin-1 family
      cl27535
      Location:205 → 847
      Amino_oxidase; Flavin containing amine oxidoreductase

    2. XM_023635540.1 → XP_023491308.1  lysine-specific histone demethylase 1A isoform X2

      UniProtKB/TrEMBL
      F7DIL5
      Related
      ENSECAP00000017408.3, ENSECAT00000021154.3
      Conserved Domains (2) summary
      cl26464
      Location:41 → 128
      Atrophin-1; Atrophin-1 family
      cl27535
      Location:185 → 827
      Amino_oxidase; Flavin containing amine oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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