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    TUB TUB bipartite transcription factor [ Equus caballus (horse) ]

    Gene ID: 100070898, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TUBprovided by VGNC
    Official Full Name
    TUB bipartite transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:24654
    See related
    Ensembl:ENSECAG00000019305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See TUB in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (79724049..79842149)

    Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene NLR family pyrin domain containing 10 Neighboring gene eukaryotic translation initiation factor 3 subunit F Neighboring gene RIC3 acetylcholine receptor chaperone Neighboring gene uncharacterized LOC102149611 Neighboring gene uncharacterized LOC111774350 Neighboring gene LIM domain only 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009150.3 Chromosome 7 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization to cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubby protein homolog
    Names
    tubby bipartite transcription factor
    tubby homolog
    tubby protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009150.3 Reference EquCab3.0 Primary Assembly

      Range
      79724049..79842149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023645969.1 → XP_023501737.1  tubby protein homolog isoform X2

      UniProtKB/TrEMBL
      A0A3Q2HSP3
      Related
      ENSECAP00000038185.2, ENSECAT00000063820.3
      Conserved Domains (2) summary
      pfam01167
      Location:302 → 507
      Tub; Tub family
      pfam16322
      Location:73 → 281
      Tub_N; Tubby N-terminal

    2. XM_023645971.1 → XP_023501739.1  tubby protein homolog isoform X4

      UniProtKB/TrEMBL
      A0A5F5PPF8
      Conserved Domains (2) summary
      pfam01167
      Location:254 → 495
      Tub; Tub family
      pfam16322
      Location:73 → 233
      Tub_N; Tubby N-terminal

    3. XM_023645968.1 → XP_023501736.1  tubby protein homolog isoform X1

      UniProtKB/TrEMBL
      A0A5F5PPF8, A0A9L0R941
      Related
      ENSECAP00000058995.1, ENSECAT00000127730.1
      Conserved Domains (2) summary
      pfam01167
      Location:302 → 543
      Tub; Tub family
      pfam16322
      Location:73 → 281
      Tub_N; Tubby N-terminal

    4. XM_023645970.1 → XP_023501738.1  tubby protein homolog isoform X3

      UniProtKB/TrEMBL
      A0A3Q2I1V2, A0A5F5PPF8
      Related
      ENSECAP00000039683.2, ENSECAT00000059040.3
      Conserved Domains (2) summary
      pfam01167
      Location:258 → 499
      Tub; Tub family
      pfam16322
      Location:29 → 237
      Tub_N; Tubby N-terminal
    Nucleotide Protein
    Heading Accession and Version

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