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    RCC1 regulator of chromosome condensation 1 [ Equus caballus (horse) ]

    Gene ID: 100070733, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RCC1provided by VGNC
    Official Full Name
    regulator of chromosome condensation 1provided by VGNC
    Primary source
    VGNC:VGNC:22267
    See related
    Ensembl:ENSECAG00000017252
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See RCC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (27579505..27604474, complement)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102148403 Neighboring gene small nucleolar RNA SNORD99 Neighboring gene tRNA selenocysteine 1 associated protein 1 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene uncharacterized LOC111772067 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene phosphatase and actin regulator 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of chromosome condensation

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205211.2 → NP_001192140.1  regulator of chromosome condensation

      See identical proteins and their annotated locations for NP_001192140.1

      Status: INFERRED

      Source sequence(s)
      PJAA01000003
      UniProtKB/TrEMBL
      F6PSX1
      Related
      ENSECAP00000015007.2, ENSECAT00000018397.3
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      27579505..27604474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014737166.2 → XP_014592652.1  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:1 → 440
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    2. XM_014737165.2 → XP_014592651.1  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:1 → 440
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    3. XM_014737167.2 → XP_014592653.1  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:1 → 440
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    4. XM_014737174.2 → XP_014592660.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      F6PSX1
      Related
      ENSECAP00000070626.1, ENSECAT00000096382.1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    5. XM_014737175.2 → XP_014592661.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      F6PSX1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    6. XM_005607009.3 → XP_005607066.2  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Related
      ENSECAP00000058257.1, ENSECAT00000144869.1
      Conserved Domains (1) summary
      COG5184
      Location:1 → 440
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    7. XM_023626816.1 → XP_023482584.1  regulator of chromosome condensation isoform X1

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:41 → 480
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    8. XM_023626899.1 → XP_023482667.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      F6PSX1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    9. XM_023626853.1 → XP_023482621.1  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:1 → 440
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    10. XM_014737168.2 → XP_014592654.1  regulator of chromosome condensation isoform X3

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:1 → 440
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    11. XM_023626893.1 → XP_023482661.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      F6PSX1
      Related
      ENSECAP00000064614.1, ENSECAT00000100000.1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    12. XM_014737173.2 → XP_014592659.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      F6PSX1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    13. XM_023626886.1 → XP_023482654.1  regulator of chromosome condensation isoform X5

      UniProtKB/TrEMBL
      F6PSX1
      Conserved Domains (1) summary
      COG5184
      Location:2 → 418
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    14. XM_023626825.1 → XP_023482593.1  regulator of chromosome condensation isoform X2

      UniProtKB/TrEMBL
      F6PSX1
      Related
      ENSECAP00000063811.1, ENSECAT00000132094.1
      Conserved Domains (1) summary
      COG5184
      Location:30 → 458
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

    15. XM_023626865.1 → XP_023482633.1  regulator of chromosome condensation isoform X4

      UniProtKB/TrEMBL
      A0A9L0R9F5
      Conserved Domains (1) summary
      COG5184
      Location:41 → 430
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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