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    BNIP1 BCL2 interacting protein 1 [ Equus caballus (horse) ]

    Gene ID: 100069728, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BNIP1provided by VGNC
    Official Full Name
    BCL2 interacting protein 1provided by VGNC
    Primary source
    VGNC:VGNC:55406
    See related
    Ensembl:ENSECAG00000023543
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See BNIP1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 14 NC_009157.3 (7597108..7611838, complement)

    Chromosome 14 - NC_009157.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111767939 Neighboring gene stanniocalcin 2 Neighboring gene NK2 homeobox 5 Neighboring gene uncharacterized LOC111767727 Neighboring gene CREB3 regulatory factor Neighboring gene ATPase H+ transporting V0 subunit e1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009157.3 Chromosome 14 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle transport protein SEC20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009157.3 Reference EquCab3.0 Primary Assembly

      Range
      7597108..7611838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023617222.1 → XP_023472990.1  vesicle transport protein SEC20 isoform X1

      UniProtKB/TrEMBL
      F7CV19
      Related
      ENSECAP00000021016.2, ENSECAT00000025268.3
      Conserved Domains (2) summary
      cd15865
      Location:217 → 309
      SNARE_SEC20; SNARE motif of SEC20
      cl25732
      Location:98 → 269
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_023617223.1 → XP_023472991.1  vesicle transport protein SEC20 isoform X2

      Conserved Domains (1) summary
      cd15865
      Location:258 → 350
      SNARE_SEC20; SNARE motif of SEC20
    Nucleotide Protein
    Heading Accession and Version

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