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    LSM10 LSM10, U7 small nuclear RNA associated [ Equus caballus (horse) ]

    Gene ID: 100069271, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LSM10provided by VGNC
    Official Full Name
    LSM10, U7 small nuclear RNA associatedprovided by VGNC
    Primary source
    VGNC:VGNC:19816
    See related
    Ensembl:ENSECAG00000005071
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See LSM10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (21116224..21118757)

    Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S15 Neighboring gene uncharacterized LOC102150623 Neighboring gene organic solute carrier partner 1 Neighboring gene serine/threonine kinase 40 Neighboring gene eva-1 homolog B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U7 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone pre-mRNA DCP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic U snRNP body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U7 snRNA-associated Sm-like protein LSm10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009145.3 Reference EquCab3.0 Primary Assembly

      Range
      21116224..21118757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005607199.3 → XP_005607256.1  U7 snRNA-associated Sm-like protein LSm10 isoform X1

      See identical proteins and their annotated locations for XP_005607256.1

      UniProtKB/TrEMBL
      A0A9L0R5H2
      Related
      ENSECAP00000059295.1, ENSECAT00000134377.1
      Conserved Domains (1) summary
      cd01733
      Location:72 → 149
      LSm10; Like-Sm protein 10

    2. XM_001499047.6 → XP_001499097.1  U7 snRNA-associated Sm-like protein LSm10 isoform X2

      See identical proteins and their annotated locations for XP_001499097.1

      UniProtKB/TrEMBL
      F6RB14
      Related
      ENSECAP00000003464.1, ENSECAT00000004958.3
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10
    Nucleotide Protein
    Heading Accession and Version

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