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    HOXA1 homeobox A1 [ Equus caballus (horse) ]

    Gene ID: 100068884, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HOXA1provided by VGNC
    Official Full Name
    homeobox A1provided by VGNC
    Primary source
    VGNC:VGNC:18838
    See related
    Ensembl:ENSECAG00000021767
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See HOXA1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (58306058..58308287, complement)

    Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene uncharacterized LOC102147526 Neighboring gene uncharacterized LOC111773200 Neighboring gene uncharacterized LOC106783068 Neighboring gene homeobox A2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009147.3 Reference EquCab3.0 Primary Assembly

      Range
      58306058..58308287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001499296.5 → XP_001499346.1  homeobox protein Hox-A1 isoform X1

      See identical proteins and their annotated locations for XP_001499346.1

      UniProtKB/TrEMBL
      F6YY78
      Related
      ENSECAP00000019173.1, ENSECAT00000023167.4
      Conserved Domains (2) summary
      COG5576
      Location:177 → 287
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:234 → 286
      Homeobox; Homeobox domain

    2. XM_005609269.3 → XP_005609326.1  homeobox protein Hox-A1 isoform X2

      See identical proteins and their annotated locations for XP_005609326.1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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