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    SENP6 SUMO specific peptidase 6 [ Equus caballus (horse) ]

    Gene ID: 100068828, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SENP6provided by VGNC
    Official Full Name
    SUMO specific peptidase 6provided by VGNC
    Primary source
    VGNC:VGNC:51079
    See related
    Ensembl:ENSECAG00000021001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SENP6 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 10 NC_009153.3 (30873996..30991086)

    Chromosome 10 - NC_009153.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111775291 Neighboring gene uncharacterized LOC106782175 Neighboring gene filamin A interacting protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene translation initiation factor IF-2-like Neighboring gene myosin VI Neighboring gene interphotoreceptor matrix proteoglycan 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009153.3 Chromosome 10 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SUMO-specific endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein desumoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of kinetochore assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sentrin-specific protease 6
    Names
    SUMO1/sentrin specific peptidase 6
    Sentrin-specific protease 6-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009153.3 Reference EquCab3.0 Primary Assembly

      Range
      30873996..30991086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023650664.1 → XP_023506432.1  sentrin-specific protease 6 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2I5H1, A0A9L0SZI7
      Related
      ENSECAP00000040905.2, ENSECAT00000037579.3
      Conserved Domains (2) summary
      COG5160
      Location:664 → 776
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:976 → 1052
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    2. XM_023650666.1 → XP_023506434.1  sentrin-specific protease 6 isoform X3

      UniProtKB/TrEMBL
      A0A9L0SZI7
      Related
      ENSECAP00000074252.1, ENSECAT00000105436.1
      Conserved Domains (2) summary
      COG5160
      Location:657 → 769
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:969 → 1045
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    3. XM_023650668.1 → XP_023506436.1  sentrin-specific protease 6 isoform X5

      Conserved Domains (1) summary
      COG5160
      Location:657 → 686
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

    4. XM_023650665.1 → XP_023506433.1  sentrin-specific protease 6 isoform X2

      UniProtKB/TrEMBL
      A0A9L0SZI7
      Related
      ENSECAP00000079411.1, ENSECAT00000096103.1
      Conserved Domains (2) summary
      COG5160
      Location:660 → 772
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:972 → 1048
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    5. XM_023650667.1 → XP_023506435.1  sentrin-specific protease 6 isoform X4

      UniProtKB/TrEMBL
      F6VWI6
      Conserved Domains (2) summary
      COG5160
      Location:479 → 591
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
      cl23802
      Location:791 → 867
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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