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    SNX10 sorting nexin 10 [ Equus caballus (horse) ]

    Gene ID: 100068610, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX10provided by VGNC
    Official Full Name
    sorting nexin 10provided by VGNC
    Primary source
    VGNC:VGNC:23410
    See related
    Ensembl:ENSECAG00000013745
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SNX10 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (57619412..57695460)

    Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A2/B1 Neighboring gene chromobox 3 Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene uncharacterized LOC102147526 Neighboring gene uncharacterized LOC111773200

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-10
    Names
    Sorting nexin-10-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009147.3 Reference EquCab3.0 Primary Assembly

      Range
      57619412..57695460
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001916378.4 → XP_001916413.1  sorting nexin-10 isoform X1

      See identical proteins and their annotated locations for XP_001916413.1

      UniProtKB/TrEMBL
      F7AKE5, K9KBI1
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    2. XM_005609265.3 → XP_005609322.1  sorting nexin-10 isoform X2

      See identical proteins and their annotated locations for XP_005609322.1

      UniProtKB/TrEMBL
      A0A3Q2IC52
      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    3. XM_023639408.1 → XP_023495176.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      F7AKE5, K9KBI1
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    4. XM_014739080.2 → XP_014594566.1  sorting nexin-10 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2IC52
      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    5. XM_005609267.3 → XP_005609324.1  sorting nexin-10 isoform X3

      See identical proteins and their annotated locations for XP_005609324.1

      Conserved Domains (1) summary
      cl02563
      Location:4 → 59
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    6. XM_023639410.1 → XP_023495178.1  sorting nexin-10 isoform X1

      UniProtKB/TrEMBL
      F7AKE5, K9KBI1
      Related
      ENSECAP00000011579.3, ENSECAT00000014480.3
      Conserved Domains (1) summary
      cd06898
      Location:12 → 124
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    7. XM_005609266.3 → XP_005609323.1  sorting nexin-10 isoform X2

      See identical proteins and their annotated locations for XP_005609323.1

      UniProtKB/TrEMBL
      A0A3Q2IC52
      Related
      ENSECAP00000045947.2, ENSECAT00000038739.2
      Conserved Domains (1) summary
      cl02563
      Location:8 → 95
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein
    Heading Accession and Version

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