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    KCNT1 potassium sodium-activated channel subfamily T member 1 [ Equus caballus (horse) ]

    Gene ID: 100068421, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KCNT1provided by VGNC
    Official Full Name
    potassium sodium-activated channel subfamily T member 1provided by VGNC
    Primary source
    VGNC:VGNC:56886
    See related
    Ensembl:ENSECAG00000003311
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See KCNT1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (38706291..38769732, complement)

    Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene UBA domain containing 1 Neighboring gene calmodulin regulated spectrin associated protein 1 Neighboring gene microRNA mir-9040 Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 1 Neighboring gene P19 lipocalin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intracellular sodium-activated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables outward rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium channel subfamily T member 1
    Names
    potassium channel, subfamily T, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009168.3 Reference EquCab3.0 Primary Assembly

      Range
      38706291..38769732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023629371.1 → XP_023485139.1  potassium channel subfamily T member 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q2I547, A0A9L0R004
      Related
      ENSECAP00000056119.1, ENSECAT00000106135.1
      Conserved Domains (3) summary
      pfam00520
      Location:109 → 289
      Ion_trans; Ion transport protein
      pfam03493
      Location:450 → 545
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:224 → 297
      Ion_trans_2; Ion channel

    2. XM_023629374.1 → XP_023485142.1  potassium channel subfamily T member 1 isoform X8

      UniProtKB/TrEMBL
      A0A3Q2HEA2, A0A3Q2I547
      Related
      ENSECAP00000031901.2, ENSECAT00000032345.3
      Conserved Domains (3) summary
      pfam00520
      Location:109 → 289
      Ion_trans; Ion transport protein
      pfam03493
      Location:450 → 545
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:224 → 297
      Ion_trans_2; Ion channel

    3. XM_023629369.1 → XP_023485137.1  potassium channel subfamily T member 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2LEI0, A0A5F5PW85
      Related
      ENSECAP00000038993.1, ENSECAT00000059119.3
      Conserved Domains (3) summary
      pfam00520
      Location:129 → 309
      Ion_trans; Ion transport protein
      pfam03493
      Location:470 → 565
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:244 → 317
      Ion_trans_2; Ion channel

    4. XM_023629368.1 → XP_023485136.1  potassium channel subfamily T member 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F5PW85
      Conserved Domains (3) summary
      pfam00520
      Location:143 → 323
      Ion_trans; Ion transport protein
      pfam03493
      Location:484 → 579
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:258 → 331
      Ion_trans_2; Ion channel

    5. XM_023629370.1 → XP_023485138.1  potassium channel subfamily T member 1 isoform X4

      UniProtKB/TrEMBL
      A0A5F5PW85
      Conserved Domains (3) summary
      pfam00520
      Location:143 → 323
      Ion_trans; Ion transport protein
      pfam03493
      Location:484 → 579
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:258 → 331
      Ion_trans_2; Ion channel

    6. XM_023629367.1 → XP_023485135.1  potassium channel subfamily T member 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F5PW85, F7A7Q2
      Related
      ENSECAP00000004785.2, ENSECAT00000006697.4
      Conserved Domains (3) summary
      pfam00520
      Location:143 → 323
      Ion_trans; Ion transport protein
      pfam03493
      Location:484 → 579
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:258 → 331
      Ion_trans_2; Ion channel

    7. XM_023629372.1 → XP_023485140.1  potassium channel subfamily T member 1 isoform X6

      UniProtKB/TrEMBL
      A0A3Q2I547
      Conserved Domains (2) summary
      pfam03493
      Location:312 → 407
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:86 → 159
      Ion_trans_2; Ion channel

    8. XM_023629373.1 → XP_023485141.1  potassium channel subfamily T member 1 isoform X7

      UniProtKB/TrEMBL
      A0A5F5PW85
      Conserved Domains (3) summary
      pfam00520
      Location:143 → 323
      Ion_trans; Ion transport protein
      pfam03493
      Location:484 → 579
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
      pfam07885
      Location:258 → 331
      Ion_trans_2; Ion channel
    Nucleotide Protein
    Heading Accession and Version

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